Changelog
0.4.1 - Stormy Saturn (2023-06-13)
Added
Fixed
Bug fixes to include all evidence of CIViC
Dependencies
Deprecated
0.4.0 - Stormy Saturn (2023-05-31)
Added
Fixed
Fixed functionality for new CGI file structure
Fixed case when CIViC has no hits
Dependencies
Deprecated
0.3.3 - Iron Mercury (2023-05-05)
Added
Fixed
Fixed API docs
Dependencies
Deprecated
0.3.2 - Iron Mercury (2023-05-05)
Added
Fixed
Fixed version bump
Dependencies
Deprecated
0.3.1 - Iron Mercury (2023-05-05)
Added
Fixed
Fixed import of site-packages in setup.py
Dependencies
Deprecated
0.3.0 - Iron Mercury (2023-05-04)
Added
Added functionality to combine the results of the Knowledgebases in an HTML report
Added possibility to have non-numerical chromosome columns in the input vcf
Added deletion of CGI jobs from CGI Server after completion
Fixed
Dependencies
Deprecated
0.2.2 - Sour Venus (2023-03-16)
Added
Optional VEP annotation based filtering
Additional metadata
Usage of pyVCF3 to read vcf files
Querynator ID added for filtered vcf files
All possible reference genomes for CIViC
Fixed
Dependencies
Deprecated
Usage of pysam to read vcf files
0.2.1 - Sour Venus (2023-02-16)
Added
Fixed
Rendering API docs
Dependencies
Deprecated
0.2.0 - Sour Venus (2023-02-07)
Added
Added functionality to query the Clinical Interpretation of Variants in Cancer (CIViC) Knowledgebase
Added possibility to query bgzipped files
Fixed
Dependencies
Deprecated
0.1.3 - Diamond Neptune (2022-11-21)
Added
Fixed
Fix including module
Dependencies
Deprecated
0.1.2 - Diamond Neptune (2022-11-18)
Added
Fixed
Fix installing requirements
Dependencies
Deprecated
0.1.1 - Methane Titan (2022-11-18)
Added
Fixed
Github Actions publishing to PyPI
Fix docs
Dependencies
Deprecated
0.1.0 - initial release (2022-11-18)
Added
First release on PyPI
Created the package template with cookiecutter
Functions to query the cancergenomeinterpreter REST API
Fixed
Dependencies
Deprecated